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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041375
species: Populus trichocarpa
miRNA family: MIR169_1
source: miRBase, original name: ptc-MIR169u (MI0002271)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGACGACTTGCCTA

miRNA*
GGCAGTCTCCTTTGGCTATC

mismatches: 0
bulges: 3

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pre-miRNA
GAGGGTTGGGTAGCCAAGGACGACTTGCCTATTTCCTCCATGGGGTCCTGAAAAGAATGAAATACTGTCGTTCAGAGCTCATTGGTAGGGTTCATAGGCA
GTCTCCTTTGGCTATC
CTAACT


dot-bracket secondary structure
...(((((((((((((((((.((((.((((((.(((((((..(((..(((((.((.........))....)))))..)))..))).))))...)))))))
)))))).))))))).)
))))))



SIMILARITIES
miRBase ptc-MIR169r: 1e-16

PMRD ptc-miR169u: 5e-65

microPC miR169: 0.0004
UniProt no hits

RFAM MIR169_5: 9e-64

Identical with: ptc-miR169u from PMRD (MNEST051678)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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